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Level 8: ATACseq Pipeline

Computational Genomics Lab

Intro to Computational Genomics Lab : Level 8

Students learn to analyze chromatin accessibility data obtained from ATAC-seq experiments. This helps reveal regulatory regions of the genome.

Download Mouse Genome Annotation HERE

Download ATACseq Pipeline output files HERE

Click here to watch the full video

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This class was awesome. There was a huge emphasis on real world experience, and I really liked this aspect of the course. I wish there were a bit more guidance on the projects, but other than that I don't have any real complaints. Using a supercomputer was awesome and even helped me market myself for a job. Thank you for a great semester and I will be telling everyone to take this class!

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Level 8: ATACseq Pipeline

Optional: Input files to Run ATAC Sequencing Analysis!

ATACseq OUTPUT Files!

Let's explore Iranges : a concept of where our ATACseq peaks start and stop.

GRanges: Our genome in Ranges! Introduction to Genomic Ranges

The Genome in Ranges! Let's get our genes and other features of the Genome

Exploring the Genome in GRanges: What is the biggest gene? And much more